boxPlot |
Box plots for inferred treatment effects of individuals from target |
data4teff |
Data with feature (transcriptpmic) and treatment-effect response data for targeting individuals with a profile associated with high treatment response, as derived in an independent study with predictteff. |
feateff |
Extracts treatment, the outcome on which the effect is assessed, and feature data from transcriptomic and methylomic studies |
mean_ci |
returns the 'mean' and the error limits defined by the 'confidence interval'. |
pasiw12 |
Response to Brodalumab treatment of psoriasis. The data is used to compare the prediction of individual treatment response as inferred by predictteff on psoriasis data. It is available through data(psoriasis) |
plotPredict |
Plots predicted treatment effects of individuals from predicteff |
plotTarget |
Plots estimated treatment effects of individuals from target |
predicteff |
Predicts treatment effects on an outcome for individuals randomly sampled from the entire dataset (default 20%). |
print.pteff |
Prints pteff object |
print.tarteff |
Prints tarteff object |
psoriasis |
Data example for predictteff, which is used to infer individual Brodalumab treatment response. |
target |
Targets individuals into groups of positive, negative or neutral effect of treatment on an outcome. |
tcell |
Data example for predictteff, which is used to infer individual sex effect on tcell abundance in blood. |
teff |
teff (treatment effects classification): Package for classifying individuals into subpoulations associated with positive and negative treatment effects using feature data. |